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Identifier Index

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R

r (in Color)	ReadOnlyDictionaryContainer (in csb.core)	result (in Context)
R (in AbstractStructureMixture)	reconstruct_header() (in DensityMapWriter)	result (in InterruptibleThread)
Ra (in ChemElements)	recurrence (in SliceContext)	RESwapCommunicator (in csb.statistics.samplers.mc.multichain)
rad() (in TorsionAngles)	ReducedHamiltonian (in csb.statistics.samplers.mc.neqsteppropagator)	RESwapParameterInfo (in csb.statistics.samplers.mc.multichain)
rad() (in csb.bio.utils)	ReducedHamiltonianPerturbation (in csb.statistics.samplers.mc.neqsteppropagator)	reverse() (in csb.numeric)
radian2degree() (in csb.numeric)	register() (in OutputBuilder)	reverse_protocol (in AbstractNCMCPropagator)
Radians (in AngleUnits)	REGRESSION (in Attributes)	reverse_protocol (in AbstractNCMCSampler)
radius_of_gyration() (in csb.bio.utils)	regression() (in csb.test)	revision (in Version)
rand (in csb.statistics)	RegressionTestBuilder (in csb.test)	RevisionError (in csb.build)
random() (in AbstractDensity)	RegularStructureParser (in csb.bio.io.wwpdb)	RevisionHandler (in csb.build)
random() (in Dirichlet)	reject() (in FragmentCluster)	RevisionInfo (in csb.build)
random() (in Gamma)	rejections (in ClusterRep)	Rf (in ChemElements)
random() (in GeneralizedInverseGaussian)	RELATIVE_SA (in csb.bio.hmm)	Rg (in ChemElements)
random() (in GumbelMaximum)	REMatchProxy (in csb.core)	Rh (in ChemElements)
random() (in GumbelMinimum)	RemoteStructureProvider (in csb.bio.io.wwpdb)	RichSequence (in csb.bio.sequence)
random() (in InverseGamma)	remove() (in ClansSeqgroup)	rkinetic_energy() (in ReducedHamiltonian)
random() (in InverseGaussian)	remove() (in CustomStructureProvider)	rlog_prob() (in ReducedHamiltonian)
random() (in Laplace)	remove() (in FileSystemStructureProvider)	rmsd (in FragmentMatch)
random() (in MultivariateGaussian)	remove() (in StructureChainsTable)	RMSD (in Metrics)
random() (in Normal)	remove_entry() (in Clans)	rmsd() (in csb.apps.precision)
random() (in ScaleMixture)	remove_entry_by_name() (in Clans)	rmsd() (in Chain)
RANDOM_RMSD (in csb.bio.fragments)	remove_group() (in Clans)	rmsd() (in TorsionAnglesCollection)
random_rotation() (in csb.statistics.rand)	remove_hsp() (in ClansEntry)	rmsd() (in csb.bio.utils)
RandomCoil (in csb.bio.nmr)	RENSSwapCommunicator (in csb.statistics.samplers.mc.multichain)	rmsd_cur() (in csb.bio.utils)
randomize_means() (in GaussianMixture)	RENSTrajInfo (in csb.statistics.samplers.mc.multichain)	rmsd_to() (in Assignment)
randomize_scales() (in GaussianMixture)	repfactor (in ClansParams)	Rn (in ChemElements)
rank (in ResidueEventInfo)	ReplicaExchangeMC (in csb.statistics.samplers.mc.multichain)	RNA (in SequenceTypes)
rank (in HHpredHit)	ReplicaHistory (in csb.statistics.samplers.mc.multichain)	ROBUST (in CombinedResidueMapper)
rank (in HMMLayer)	RepositoryImp (in csb.io.tsv)	RobustResidueMapper (in csb.bio.io.wwpdb)
rank (in State)	repvalpow (in ClansParams)	ROOT (in csb.build)
RANK (in ChemShiftReader)	reRaise() (in Case)	Rosetta (in FragmentTypes)
rank (in ResidueInfo)	residue (in HMMLayer)	rosetta (in csb.bio.fragments)
rank (in Label)	RESIDUE (in ChemShiftReader)	RosettaFragment (in csb.bio.fragments.rosetta)
rank (in ResidueInfo)	residue (in Label)	RosettaFragmentMap (in csb.bio.fragments.rosetta)
rank (in Residue)	residue (in Atom)	RosettaFragsetFactory (in csb.bio.fragments)
RANK3 (in ChemShift3Reader)	Residue (in csb.bio.structure)	rotation_matrix() (in csb.numeric)
Rb (in ChemElements)	residue() (in AssignmentFactory)	rotmtx (in Clans)
Re (in ChemElements)	residue() (in ChemShiftAssignmentFactory)	rows (in AbstractAlignment)
read() (in RosettaFragmentMap)	RESIDUE3 (in ChemShift3Reader)	rows (in Chart)
read() (in BaseSequenceParser)	residue_contacts() (in ContactMap)	Ru (in ChemElements)
read() (in DensityMapReader)	ResidueAssignmentInfo (in csb.bio.fragments)	run() (in AppRunner)
read() (in BasePeakListReader)	ResidueAssignmentInfo (in csb.bio.io.dssp)	run() (in ProfileBuilder)
read() (in SparkyPeakListReader)	ResidueAtomsTable (in csb.bio.structure)	run() (in Deconvolution)
read() (in XeasyPeakListReader)	ResidueEventInfo (in csb.bio.fragments)	run() (in DeconvolutionApp)
read() (in GitHandler)	ResidueInfo (in csb.bio.fragments.rosetta)	run() (in HHsearch)
read() (in MercurialHandler)	ResidueInfo (in csb.bio.io.wwpdb)	run() (in LibrarySuperimposer)
read() (in RevisionHandler)	ResidueInfo (in csb.bio.sequence)	run() (in ProcheckParser)
read() (in SubversionHandler)	ResidueMappingError (in csb.bio.io.wwpdb)	run() (in WhatCheckParser)
read_a3m() (in SequenceAlignmentReader)	ResidueNotFoundError (in csb.bio.sequence.alignment)	run() (in Console)
read_all() (in BasePeakListReader)	residues (in Target)	run() (in InterruptibleThread)
read_fasta() (in SequenceAlignmentReader)	residues (in RosettaFragment)	run() (in Shell)
read_file() (in ChemShiftReader)	residues (in ProfileHMM)	run() (in Backend)
read_file() (in BasePeakListReader)	residues (in AbstractSequence)	run() (in Console)
read_header() (in DensityMapReader)	residues (in AlignedSequenceAdapter)	run_once() (in Deconvolution)
read_sequence() (in BaseSequenceParser)	residues (in Chain)	runmany() (in HHsearch)
read_sequence() (in PDBSequenceParser)	resize() (in Backend)	running (in Backend)
read_sequence() (in SequenceParser)	resolution (in Structure)	running_average() (in csb.statistics)
read_shifts() (in SecondaryShiftReader)	RESOURCES (in AtomConnectivity)	runstrict() (in Shell)
read_shifts() (in ChemShiftReader)	RESOURCES (in RandomCoil)	RWMCPropagator (in csb.statistics.samplers.mc.propagators)
readall() (in EntryReader)	restrict() (in Clans)	RWMCSampler (in csb.statistics.samplers.mc.singlechain)
ReadOnlyCollectionContainer (in csb.core)	restrict_to_max_pvalue() (in Clans)