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Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

T

t (in AbstractStructureMixture)	threshold (in TorsionAnglePredictor)	traj_length (in MDParam)
Ta (in ChemElements)	Thymine (in NucleicAlphabet)	Trajectory (in csb.statistics.samplers.mc)
table (in LibrarySuperimposer)	Ti (in ChemElements)	TrajectoryBuilder (in csb.statistics.samplers.mc)
table (in RepositoryImp)	TimeoutError (in csb.io)	transform() (in Assignment)
table (in Step)	timestep (in HMCStepRENSSwapParameterInfo)	transform() (in AbstractEntity)
Table (in csb.io.tsv)	timestep (in MDRENSSwapParameterInfo)	transform() (in Atom)
target (in AppRunner)	timestep (in MDParam)	transform() (in DisorderedAtom)
target (in AppRunner)	timestep (in MDPropagator)	transform() (in csb.bio.utils)
target (in AppRunner)	timestep (in HMCSampler)	Transition (in csb.bio.hmm)
target (in AppRunner)	title (in Chart)	TRANSITION_PSEUDO (in ProfileBuilder)
target (in AppRunner)	Tl (in ChemElements)	transition_pseudocounts (in ProfileHMM)
target (in AppRunner)	Tm (in ChemElements)	TransitionExistsError (in csb.bio.hmm)
target (in AppRunner)	tm_score (in FragmentMatch)	TransitionNotFoundError (in csb.bio.hmm)
target (in AppRunner)	tm_score() (in Chain)	transitions (in State)
target (in AppRunner)	tm_score() (in csb.bio.utils)	TransitionTable (in csb.bio.hmm)
target (in AppRunner)	tm_superimpose() (in Chain)	TransitionType (in csb.bio.hmm)
target (in AppRunner)	tm_superimpose() (in csb.bio.utils)	trapezoidal() (in csb.numeric)
Target (in csb.bio.fragments)	to_a3m() (in HHpredHitAlignment)	trapezoidal_2d() (in csb.numeric)
target (in TorsionAnglePredictor)	to_clans_color() (in Color)	trim() (in csb.numeric)
target() (in AssignmentFactory)	to_degrees() (in TorsionAngles)	TrivialHeatWorkJacobianLogger (in csb.statistics.samplers.mc.neqsteppropagator)
target() (in ChemShiftAssignmentFactory)	to_fasta() (in SequenceCollection)	TRP (in ProteinAlphabet)
target_details() (in BenchmarkAdapter)	to_fasta() (in Structure)	TRP (in StdProteinAlphabet)
target_id (in ProfileBuilder)	to_hmm() (in ProfileHMM)	truncated_gamma() (in csb.statistics.rand)
TargetResidue (in csb.bio.fragments)	to_pdb() (in Ensemble)	truncated_normal() (in csb.statistics.rand)
targets() (in BenchmarkAdapter)	to_pdb() (in Structure)	TsallisEnsemble (in csb.statmech.ensembles)
tau (in InterpolationFactory)	to_radians() (in TorsionAngles)	tsv (in csb.io)
Tb (in ChemElements)	to_string() (in SecondaryStructure)	Turn (in SecStructures)
Tc (in ChemElements)	to_string() (in SecondaryStructureElement)	Type (in ArgHandler)
Te (in ChemElements)	to_three_state() (in SecondaryStructure)	type (in ResidueEventInfo)
TEMP (in Config)	torsion (in Assignment)	type (in TargetResidue)
temp (in Config)	torsion (in ResidueEventInfo)	type (in State)
temperature (in ThermostattedMDRENSSwapParameterInfo)	torsion (in RosettaFragment)	type (in Transition)
temperature (in MDParam)	torsion (in Chain)	type (in ClansSeqgroup)
temperature (in ReducedHamiltonian)	torsion (in Residue)	type (in ResidueInfo)
temperature (in AbstractSingleChainMC)	torsion_at() (in Assignment)	type (in AbstractSequence)
TempFile (in csb.io)	torsion_rmsd() (in csb.bio.utils)	type (in ResidueInfo)
TempFolder (in csb.io)	TorsionAnglePredictor (in csb.bio.fragments)	type (in SequenceAdapter)
templates (in FileSystemStructureProvider)	TorsionAngles (in csb.bio.structure)	type (in Chain)
test (in csb)	TorsionAnglesCollection (in csb.bio.structure)	type (in Residue)
Th (in ChemElements)	TorsionPredictionInfo (in csb.bio.fragments)	type (in SecondaryStructureElement)
ThermostattedMDPropagator (in csb.statistics.samplers.mc.propagators)	tostring() (in Enum)	type (in ColumnInfo)
ThermostattedMDRENS (in csb.statistics.samplers.mc.multichain)	total_mem (in Cumulative)	typedproperty (in csb.core)
ThermostattedMDRENSSwapParameterInfo (in csb.statistics.samplers.mc.multichain)	total_swaps (in SingleSwapStatistics)	TYPES (in SQLiteRepository)
THR (in ProteinAlphabet)	traj12 (in AbstractSwapCommunicator)	TYR (in ProteinAlphabet)
THR (in StdProteinAlphabet)	traj21 (in AbstractSwapCommunicator)	TYR (in StdProteinAlphabet)
threshold (in FragmentCluster)	traj_length (in MDRENSSwapParameterInfo)