Class State

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

• type (csb.core.EnumItem) - one of the States enumeration values, e.g. States.Match
• emit (list) - a collection of emittable state names allowed for the state, e.g. the members of SequenceAlphabets.Protein. If not defined, the state will be created as a silent (unobservable).

Raises:

• ValueError - if type is not a member of the States enum

Overrides: object.__init__

(inherited documentation)

repr(x)

Overrides: object.__repr__

(inherited documentation)

background

Lookup table with background probabilities

Get Method:

unreachable.background(self) - Lookup table with background probabilities

Type:

EmissionTable

emission

Lookup table with available emission probabilities

Get Method:

unreachable.emission(self) - Lookup table with available emission probabilities

Type:

EmissionTable

rank

Get Method:

unreachable.rank(self)

Set Method:

unreachable.rank(self, value)

silent

Whether this state can emit something

Get Method:

unreachable.silent(self) - Whether this state can emit something

Type:

bool

transitions

Lookup table with available transitions to other states

Get Method:

unreachable.transitions(self) - Lookup table with available transitions to other states

Type:

TransitionTable

type

State type: one of the States

Get Method:

unreachable.type(self) - State type: one of the States

Set Method:

unreachable.type(self, value)

Type:

enum item