Package csb :: Package bio

Package bio

Core bioinformatics abstractions and I/O.

Submodules

csb.bio.fragments: APIs for working with protein structure fragments and libraries.
- csb.bio.fragments.rosetta: Rosetta fragment libraries.
csb.bio.hmm: HHpred and Hidden Markov Model APIs.
- csb.bio.hmm.pseudocounts
csb.bio.io: I/O for various biological file formats.
- csb.bio.io.clans: Classes for parsing/manipulating/writing CLANS (by Tancred Frickey) files
- csb.bio.io.cs: Simple NMR STAR chemical shift readers.
- csb.bio.io.dssp: DSSP Parser
- csb.bio.io.fasta: FASTA format sequence I/O.
- csb.bio.io.hhpred: HHpred-related format parsers.
- csb.bio.io.mrc: Cryo-EM density map I/O
- csb.bio.io.noe: Simple XEASY and Sparky peak list parsers.
- csb.bio.io.procheck: Procheck parser
- csb.bio.io.psipred: PSIPRED Parser
- csb.bio.io.svg: Build SVG diagrams from various csb objects.
- csb.bio.io.vasco: VASCO Chemical Shift format parser.
- csb.bio.io.whatif: Simple WhatIf/WhatCheck Summary parser
- csb.bio.io.wwpdb: PDB structure parsers, format builders and database providers.
csb.bio.nmr: NMR related objects.
csb.bio.sequence: Sequence and sequence alignment APIs.
- csb.bio.sequence.alignment: Collection of sequence alignment algorithms.
csb.bio.structure: 3D and secondary structure APIs.
csb.bio.utils: Computational utility functions.

Variables
	__package__ = `None` hash(x)