Class SecondaryStructureElement

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

• start (float) - start position with reference to the chain
• end (float) - end position with reference to the chain
• type (csb.core.EnumItem) - element type - a member of the SecStructures enum
• score (int) - secondary structure prediction confidence, if available

Raises:

• IndexError - if start/end positions are out of range

Overrides: object.__init__

(inherited documentation)

repr(x)

Overrides: object.__repr__

(inherited documentation)

str(x)

Overrides: object.__str__

(inherited documentation)

Merge self and other.

Parameters:

• other (SecondaryStructureElement)

Returns: SecondaryStructureElement

a new secondary structure element

Return True if self overlaps with other.

Parameters:

• other (SecondaryStructureElement)

Returns: bool

Dump the element as a string.

Returns: str

string representation of the element

end

End position (1-based)

Get Method:

unreachable.end(self) - End position (1-based)

Set Method:

unreachable.end(self, value)

Type:

int

length

Number of residues covered by this element

Get Method:

unreachable.length(self) - Number of residues covered by this element

Type:

int

score

Secondary structure confidence values for each residue

Get Method:

unreachable.score(self) - Secondary structure confidence values for each residue

Set Method:

unreachable.score(self, scores)

Type:

CollectionContainer

start

Start position (1-based)

Get Method:

unreachable.start(self) - Start position (1-based)

Set Method:

unreachable.start(self, value)

Type:

int

type

Secondary structure type - a member of SecStructures

Get Method:

unreachable.type(self) - Secondary structure type - a member of SecStructures

Set Method:

unreachable.type(self, value)

Type:

enum item