[ Identifiers | Bugs | Deprecations ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

E

E() (in ReducedHamiltonian)	entries (in Clans)	estimate_with_fixed_beta() (in GenNormalBruteForceEstimator)
e_max (in FermiEnsemble)	entries() (in EntryReader)	EstimationFailureError (in csb.statistics.pdf)
e_min (in TsallisEnsemble)	entropy() (in csb.statistics)	estimator (in AbstractDensity)
e_step() (in GaussianMixture)	entropy() (in MaxentModel)	estimator (in ScaleMixturePrior)
effective_deletions (in HMMLayer)	entry_id (in EntryID)	Eu (in ChemElements)
effective_insertions (in HMMLayer)	entry_id (in Chain)	euler() (in csb.numeric)
effective_matches (in HMMLayer)	EntryID (in csb.bio.io.wwpdb)	euler_angles() (in csb.numeric)
effective_matches (in ProfileHMM)	EntryReader (in csb.io)	EULER_MASCHERONI (in csb.numeric)
ELEMENT (in ChemShiftReader)	EntryWriter (in csb.io)	EULER_MASCHERONI (in csb.statistics.pdf)
element (in Atom)	Enum (in csb.core)	eval_corr() (in Deconvolution)
element() (in NOEPeak)	enum (in EnumItem)	eval_loss() (in Deconvolution)
element() (in NOESpectrum)	enum (in csb.core)	evaluate() (in AbstractGradient)
ELEMENT3 (in ChemShift3Reader)	EnumBase (in csb.core)	evaluate() (in AbstractDensity)
em() (in GaussianMixture)	EnumItem (in csb.core)	evaluate() (in Gradient)
embd (in csb.apps)	EnumMemberError (in csb.core)	evaluate_heat (in AbstractPropagation)
emission (in State)	EnumMeta (in csb.core)	evaluate_work (in AbstractPerturbation)
emission_profile() (in ProfileHMM)	EnumValueError (in csb.core)	evalue (in HHpredHit)
EMISSION_PSEUDO (in ProfileBuilder)	Envelope (in csb.statistics.ars)	evd (in ProfileHMM)
emission_pseudocounts (in ProfileHMM)	Equals (in csb.io.tsv)	EVDParameters (in csb.bio.hmm)
emission_similarity() (in ProfileHMM)	equals() (in HHpredHit)	exchange() (in ClusterRep)
EmissionExistsError (in csb.bio.hmm)	equals() (in Where)	execute() (in RepositoryImp)
EmissionProfileSegment (in csb.bio.hmm)	Er (in ChemElements)	execute() (in SQLiteRepository)
EmissionTable (in csb.bio.hmm)	errors (in Target)	execute() (in Case)
empty() (in Stack)	Es (in ChemElements)	exit() (in AppRunner)
end (in Assignment)	estimate() (in AbstractDensity)	exit() (in Application)
end (in FragmentMatch)	estimate() (in AbstractEstimator)	exit() (in Console)
end (in RosettaFragment)	estimate() (in DirichletEstimator)	ExitCodes (in csb.apps)
end (in HHpredHit)	estimate() (in GammaMLEstimator)	ExitCodes (in csb.apps.bfit)
end (in ProfileHMM)	estimate() (in GaussianMLEstimator)	ExitCodes (in csb.apps.bfite)
End (in States)	estimate() (in GenNormalBruteForceEstimator)	ExitCodes (in csb.apps.buildhmm)
end (in AlignmentResult)	estimate() (in GumbelMaxMomentsEstimator)	ExitCodes (in csb.apps.csfrag)
end (in SecondaryStructure)	estimate() (in GumbelMinMomentsEstimator)	ExitCodes (in csb.apps.embd)
end (in SecondaryStructureElement)	estimate() (in InverseGaussianMLEstimator)	ExitCodes (in csb.apps.helloworld)
end() (in REMatchProxy)	estimate() (in LaplaceMLEstimator)	ExitCodes (in csb.apps.hhfrag)
end_marker (in EntryReader)	estimate() (in MultivariateGaussianMLEstimator)	ExitCodes (in csb.apps.hhsearch)
energy (in AbstractMC)	estimate() (in NullEstimator)	ExitCodes (in csb.apps.precision)
energy (in AbstractEnsembleMC)	estimate() (in GammaPosteriorMAP)	ExitCodes (in csb.apps.promix)
energy (in AbstractSingleChainMC)	estimate() (in GammaPosteriorSampler)	exp (in csb.statistics.ars)
energy() (in MaxentModel)	estimate() (in GammaScaleMAP)	exp() (in csb.numeric)
energy() (in BoltzmannEnsemble)	estimate() (in GammaScaleSampler)	EXP_MAX (in csb.numeric)
energy() (in CompositeEnsemble)	estimate() (in InvGammaPosteriorMAP)	EXP_MIN (in csb.numeric)
energy() (in FermiEnsemble)	estimate() (in InvGammaPosteriorSampler)	Expression (in csb.io.tsv)
energy() (in StatisticalEnsemble)	estimate() (in InvGammaScaleMAP)	expression (in Step)
energy() (in TsallisEnsemble)	estimate() (in InvGammaScaleSampler)	EXT_TOOL_FAILURE (in ExitCodes)
Ensemble (in csb.bio.structure)	estimate() (in AbstractWHAM)	EXT_TOOL_FAILURE (in ExitCodes)
EnsembleModelsCollection (in csb.bio.structure)	estimate() (in NonparametricWHAM)	extend (in TorsionAnglePredictor)
ensembles (in csb.statmech)	estimate() (in WHAM)	ExtendedOutputBuilder (in csb.bio.fragments.rosetta)
ensembles (in CompositeEnsemble)	estimate_means() (in GaussianMixture)	extract() (in AbstractSequence)
EnsembleState (in csb.statistics.samplers)	estimate_means() (in SegmentMixture)	extract() (in Sequence)
ensureDataConsistency() (in Config)	estimate_scales() (in GaussianMixture)	extract() (in SequenceAdapter)
EntityIndexError (in csb.bio.structure)	estimate_T() (in AbstractStructureMixture)	extract_fragments() (in CSfrag)
EntityNotFoundError (in csb.bio.structure)	estimate_T() (in ConformerMixture)	extract_fragments() (in HHfrag)
EntityNotSupportedError (in csb.bio.nmr)	estimate_T() (in SegmentMixture)