Package csb :: Package bio :: Package hmm :: Class EmissionProfileSegment

Class EmissionProfileSegment

   object --+        
            |        
   ProfileHMM --+    
                |    
ProfileHMMSegment --+
                    |
                   EmissionProfileSegment

Represents a segment of the Match state emission probabilities of a ProfileHMM. Contains only Match states, connected with equal transition probabilities of 100%.

Instance Methods

Inherited from ProfileHMMSegment: __init__

Inherited from ProfileHMM: add_emission_pseudocounts, add_transition_pseudocounts, chain, convert_scores, emission_profile, emission_similarity, segment, serialize, structure, subregion, to_hmm

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods
Inherited from `ProfileHMM`: `deserialize`

Properties

Inherited from ProfileHMMSegment: source_end, source_start

Inherited from ProfileHMM: alignment, all_layers, consensus, dssp, dssp_solvent, effective_matches, emission_pseudocounts, end, evd, family, has_structure, id, layers, length, logbase, name, pseudocounts, psipred, residues, scale, score_units, start, start_insertion, transition_pseudocounts, version

Inherited from object: __class__