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Identifier Index

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I

I (in ChemElements)	insert() (in Envelope)	InvGammaPosteriorMAP (in csb.statistics.scalemixture)
id (in FragmentMatch)	Insertion (in States)	InvGammaPosteriorSampler (in csb.statistics.scalemixture)
id (in Target)	INSERTION (in NucleicAlphabet)	InvGammaPrior (in csb.statistics.scalemixture)
id (in RosettaFragment)	INSERTION (in ProteinAlphabet)	InvGammaScaleMAP (in csb.statistics.scalemixture)
id (in HHpredHit)	INSERTION (in UnknownAlphabet)	InvGammaScaleSampler (in csb.statistics.scalemixture)
id (in ProfileHMM)	insertion_at() (in A3MAlignment)	invoke() (in Backend)
id (in ResidueInfo)	insertion_code (in ResidueInfo)	io (in csb.bio)
id (in AbstractSequence)	insertion_code (in Residue)	io (in csb)
id (in SequenceAdapter)	inspect_header() (in DensityMapReader)	IO_ERROR (in ExitCodes)
id (in Chain)	integrate() (in AbstractIntegrator)	IO_ERROR (in ExitCodes)
id (in Residue)	integrate() (in FastLeapFrog)	IO_ERROR (in ExitCodes)
id_factory (in StructureAlignmentFactory)	integrate_once() (in AbstractIntegrator)	IO_ERROR (in ExitCodes)
identicals (in AlignmentResult)	integrate_once() (in LeapFrog)	IO_ERROR (in ExitCodes)
identifiers (in CustomStructureProvider)	integrate_once() (in VelocityVerlet)	IO_ERROR (in ExitCodes)
identity (in HHpredHit)	integrator (in HMCStepRENSSwapParameterInfo)	IO_ERROR (in ExitCodes)
identity (in AlignmentResult)	integrator (in MDParam)	IO_ERROR (in ExitCodes)
IdentityMatrix (in csb.bio.sequence.alignment)	integrators (in csb.numeric)	IO_ERROR (in ExitCodes)
ILE (in ProteinAlphabet)	intensity (in NOEPeak)	Ir (in ChemElements)
ILE (in StdProteinAlphabet)	intermediate_steps (in HMCStepRENSSwapParameterInfo)	is_empty (in AlignmentResult)
In (in ChemElements)	InterpolationFactory (in csb.statistics.samplers.mc.multichain)	is_empty() (in ClansSeqgroup)
In (in csb.io.tsv)	InterruptibleThread (in csb.core)	is_mirror_image() (in csb.bio.utils)
in_() (in Where)	inv_digamma_minus_log() (in csb.statistics.scalemixture)	is_modified (in ResidueInfo)
includes() (in HHpredHit)	inv_gaussian() (in csb.statistics.rand)	is_modified (in NucleicResidue)
IncompatibleEstimatorError (in csb.statistics.pdf)	inv_psi() (in csb.numeric)	is_modified (in Residue)
increment_K() (in GaussianMixture)	INVALID_DATA (in ExitCodes)	is_unity_multiple (in InvertibleMatrix)
inertia_tensor() (in csb.bio.utils)	INVALID_DATA (in ExitCodes)	is_virtual (in AbstractParameter)
inf (in ARS)	INVALID_DATA (in ExitCodes)	is_virtual (in NonVirtualParameter)
init() (in TorsionAnglePredictor)	INVALID_DATA (in ExitCodes)	ISites (in FragmentTypes)
init_state (in RENSTrajInfo)	INVALID_DATA (in ExitCodes)	ismember() (in Enum)
initapp() (in AppRunner)	INVALID_DATA (in ExitCodes)	isnull (in FileBuilder)
initapp() (in AppRunner)	InvalidColumnError (in csb.io.tsv)	ispg (in HeaderInfo)
initapp() (in AppRunner)	InvalidCommandError (in csb.io)	isreal() (in csb.numeric)
initial (in AbstractPropagationResult)	InvalidEntryIDError (in csb.bio.io.wwpdb)	ItemNotFoundError (in csb.core)
initial (in PropagationResult)	InvalidKeyError (in csb.core)	items (in FragmentCluster)
initial (in Trajectory)	InvalidNamespaceError (in csb.test)	items (in AbstractEntity)
initial_values() (in ARSPosteriorAlpha)	InvalidOperation (in csb.bio.structure)	items (in Atom)
initialize() (in Clans)	InvalidOperationError (in csb.apps.csfrag)	items (in Chain)
initialize() (in ARS)	InvalidOperationError (in csb.apps.hhfrag)	items (in Ensemble)
initialize_coordinates() (in ClansEntry)	InvalidResidueError (in csb.bio.nmr)	items (in Residue)
input (in Console)	inverse (in InvertibleMatrix)	items (in Structure)
INPUT_ERROR (in ExitCodes)	InverseGamma (in csb.statistics.pdf)	iterable() (in csb.core)
insert() (in RepositoryImp)	InverseGaussian (in csb.statistics.pdf)	iterations (in HMCPropagationParam)
insert() (in SQLiteRepository)	InverseGaussianMLEstimator (in csb.statistics.pdf)
insert() (in Table)	InvertibleMatrix (in csb.numeric)