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CSB v1.2.5.d7fd331
Package csb :: Package bio :: Package fragments :: Module rosetta :: Class RosettaFragment
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Class RosettaFragment

source code

object --+
         |
        RosettaFragment

Represents a single Rosetta fragment match.

Instance Methods
 
__init__(self, source_id, qstart, qend, start, end, score, residues)
x.__init__(...) initializes x; see help(type(x)) for signature		 source code
 
__iter__(self) source code
 
__len__(self) source code
 
__lt__(self, other) source code
 
__str__(self)
str(x)		 source code
RosettaFragment
subregion(self, qstart, qend)
Extract a subregion from the fragment.		 source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Static Methods
RosettaFragment
from_object(assignment)
Factory method: build a rosetta fragment from an assignment object.		 source code
Properties
  accession
  chain
  end
  id
  length
  qend
  qstart
  residues
  score
  source_id
  start
  torsion

Inherited from object: __class__

Method Details

__init__(self, source_id, qstart, qend, start, end, score, residues)
(Constructor)

source code 

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:
  • source_id (str) - entry ID of the source PDB chain (in accnC format)
  • qstart (int) - start position in target (rank)
  • qend (int) - end position in target (rank)
  • start (int) - start position in source (rank)
  • end (int) - end position in source (rank)
  • score (float) - score of the fragment
  • residues (iterable of ResidueInfo) - fragment residue structs
Overrides: object.__init__
(inherited documentation)

__str__(self)
(Informal representation operator)

source code 

str(x)

Overrides: object.__str__
(inherited documentation)

from_object(assignment)
Static Method

source code 

Factory method: build a rosetta fragment from an assignment object.

Parameters:
Returns: RosettaFragment

subregion(self, qstart, qend)

source code 

Extract a subregion from the fragment.

Parameters:
  • qstart (int) - start position in target
  • qend (int) - end position in target
Returns: RosettaFragment
a new fragment (deep copy)

Property Details

accession

Get Method:
unreachable.accession(self)

chain

Get Method:
unreachable.chain(self)

end

Get Method:
unreachable.end(self)

id

Get Method:
unreachable.id(self)

length

Get Method:
unreachable.length(self)

qend

Get Method:
unreachable.qend(self)

qstart

Get Method:
unreachable.qstart(self)

residues

Get Method:
unreachable.residues(self)

score

Get Method:
unreachable.score(self)

source_id

Get Method:
unreachable.source_id(self)

start

Get Method:
unreachable.start(self)

torsion

Get Method:
unreachable.torsion(self)

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