Package csb :: Package bio :: Package fragments :: Class ClusterRep

Class ClusterRep

object --+
         |
        ClusterRep

Cluster's representative (centroid) node. This object carries the result of shrinking itself.

Instance Methods

__init__(self, centroid, mean, consistency, count, rejections=0, alternative=None)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

exchange(self)
If an alternative is available, swap the centroid and the alternative.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
	alternative
	centroid
	confidence Confidence of assignment: log10(count) * consistency
	consistency
	count
	has_alternative
	mean
	rejections
Inherited from `object`: `__class__`

Method Details

init(self, centroid, mean, consistency, count, rejections=0, alternative=None)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

centroid (ClusterNode) - rep node
mean (float) - current mean distance in the cluster
consistency (float) - percentage of pairwise distances below the RMSD threshold
count (int) - current number of nodes in the cluster
rejections (int) - total number of rejections
alternative - suggested cluster rep alternative (e.g. structurally similar to the centroid, but longer)

Overrides: object.__init__

(inherited documentation)

Property Details

alternative

Get Method:: unreachable.alternative(self)

centroid

Get Method:: unreachable.centroid(self)

confidence

Confidence of assignment: log10(count) * consistency

Get Method:: unreachable.confidence(self) - Confidence of assignment: log10(count) * consistency

consistency

Get Method:: unreachable.consistency(self)

count

Get Method:: unreachable.count(self)

has_alternative

Get Method:: unreachable.has_alternative(self)

mean

Get Method:: unreachable.mean(self)

rejections

Get Method:: unreachable.rejections(self)

Class ClusterRep

__init__(self, centroid, mean, consistency, count, rejections=0, alternative=None) (Constructor)

alternative

centroid

confidence

consistency

count

has_alternative

mean

rejections

init(self, centroid, mean, consistency, count, rejections=0, alternative=None)
(Constructor)