Package csb :: Package bio :: Package fragments :: Class ClusterNode

Class ClusterNode

object --+
         |
        ClusterNode

Cluster node.

Instance Methods

__init__(self, fragment, distance='rmsd_to', fixed=False)
x.__init__(...) initializes x; see help(type(x)) for signature source code

float

distance(self, other)
Returns: the distance between self and another node

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

ClusterNode

create(fragment, method='rmsd_to', extend=False)
Create a new ClusterNode given a specified Assignment. source code

Class Variables
	FIXED = `0.7`

Properties
Inherited from `object`: `__class__`

Method Details

init(self, fragment, distance=`'rmsd_to'`, fixed=False)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

fragment (Assignment) - fragment
distance (str) - distance metric (a Metrics member, default is RMSD)
fixed (bool) - mark this node as fixed (cannot be rejected)

Overrides: object.__init__

(inherited documentation)

create(fragment, method=`'rmsd_to'`, extend=False)
Static Method

source code

Create a new ClusterNode given a specified Assignment. If this assignment is a high probability match, define it as a fixed fragment.

Returns: ClusterNode

distance(self, other)

source code

Parameters:

other (ClusterNode)

Returns: float

the distance between self and another node

Class ClusterNode

__init__(self, fragment, distance='rmsd_to', fixed=False) (Constructor)

create(fragment, method='rmsd_to', extend=False) Static Method

distance(self, other)

init(self, fragment, distance=`'rmsd_to'`, fixed=False)
(Constructor)

create(fragment, method=`'rmsd_to'`, extend=False)
Static Method