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Package csb :: Package bio :: Package io :: Module wwpdb :: Class EntryID
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Class EntryID

source code

object --+
         |
        EntryID
Known Subclasses:

Represents a PDB Chain identifier. Implementing classes must define how the original ID is split into accession number and chain ID.

Nested Classes
  __metaclass__
Metaclass for defining Abstract Base Classes (ABCs).
Instance Methods
 
__init__(self, id)
x.__init__(...) initializes x; see help(type(x)) for signature		 source code
 
__str__(self)
str(x)		 source code
str
format(self)
Returns: the identifier in its original format		 source code
tuple of str
parse(self, id)
Split id into accession number and chain ID.		 source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Static Methods
EntryID
create(id)
Guess the format of id and parse it.		 source code
Class Variables
  __abstractmethods__ = frozenset(['parse'])
Properties
str accession
Accession number part of the Entry ID
str chain
Chain ID part of the Entry ID
str entry_id
Accession number + Chain ID

Inherited from object: __class__

Method Details

__init__(self, id)
(Constructor)

source code 

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:
  • id (str) - identifier
Overrides: object.__init__
(inherited documentation)

__str__(self)
(Informal representation operator)

source code 

str(x)

Overrides: object.__str__
(inherited documentation)

create(id)
Static Method

source code 

Guess the format of id and parse it.

Returns: EntryID
a new PDB ID of the appropriate type

format(self)

source code 
Returns: str
the identifier in its original format

parse(self, id)

source code 

Split id into accession number and chain ID.

Parameters:
  • id (str) - PDB identifier
Returns: tuple of str
(accession, chain)
Raises:

Property Details

accession

Accession number part of the Entry ID

Get Method:
unreachable.accession(self) - Accession number part of the Entry ID
Type:
str

chain

Chain ID part of the Entry ID

Get Method:
unreachable.chain(self) - Chain ID part of the Entry ID
Type:
str

entry_id

Accession number + Chain ID

Get Method:
unreachable.entry_id(self) - Accession number + Chain ID
Type:
str

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