Package csb :: Package bio :: Package io :: Module cs :: Class ChemShiftReader

Class ChemShiftReader

object --+
         |
        ChemShiftReader

Known Subclasses:

ChemShift3Reader

Simple NMR STAR v2 chemical shift reader.

Note: This is not a full-fledged, semantic NMR STAR parser. It handles only the chemical shift table.

Instance Methods

__init__(self, frame='save_assigned_chemical_shifts')
x.__init__(...) initializes x; see help(type(x)) for signature source code

tuple of ChemShiftInfo

read_file(self, filename)
Parse the specified file.

source code

tuple of ChemShiftInfo

read_shifts(self, star_table)
Parse a given NMR STAR chemical shift table.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

ChemShiftReader

create(frame='save_assigned_chemical_shifts', version=2)
Parser factory: create a new parser, given a saveframe name and format verison. source code

ChemShiftReader

guess(file, frame='save_assigned_chemical_shifts')
Parser factory: try to guess the correct NMR STAR version from a given file and create an appropriate parser. source code

Class Variables
	ATOM = `'_Atom_name'`
	ELEMENT = `'_Atom_type'`
	FRAME = `'save_assigned_chemical_shifts'`
	RANK = `'_Residue_seq_code'`
	RESIDUE = `'_Residue_label'`
	SHIFT = `'_Chem_shift_value'`