Package csb :: Package bio :: Package fragments :: Class BenchmarkAdapter

Class BenchmarkAdapter

object --+
         |
        BenchmarkAdapter

Nested Classes
	Connection

Instance Methods

__init__(self, pdb_paths, connection_string=None, factory=<csb.bio.fragments.AssignmentFactory object at 0x7fe0c5616d10>)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

assignments(self, target_id, type)

source code

assignments_sec_structure(self, target_id, type)

source code

centroids(self, benchmark_id)

source code

prediction(self, target_id, type, ss=False)

source code

scores(self, benchmark_id, type)

source code

structure(self, accession, chain=None)

source code

target_details(self, target_id)

source code

targets(self, benchmark_id)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

connection_string(database='FragmentBenchmarks', host='', username='', password='') source code

Properties
Inherited from `object`: `__class__`

Method Details

init(self, pdb_paths, connection_string=None, factory=<csb.bio.fragments.AssignmentFactory object at 0x7fe0c5616d10>)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

Class BenchmarkAdapter

__init__(self, pdb_paths, connection_string=None, factory=<csb.bio.fragments.AssignmentFactory object at 0x7fe0c5616d10>) (Constructor)

init(self, pdb_paths, connection_string=None, factory=<csb.bio.fragments.AssignmentFactory object at 0x7fe0c5616d10>)
(Constructor)