Package csb :: Package bio :: Package nmr :: Class Label

Class Label

object --+
         |
        Label

Utility class for working with chemical shift labels.

Instance Methods

__init__(self, residue, rank, atom_name)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

__str__(self)
str(x)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Static Methods

str

build(residue_type, position, atom_name)
Build a new string label by specifying its components.

source code

str

from_atom(atom)
Build a new string label from an Atom.

source code

str

from_shift(shift)
Build a new string label from a ChemShiftInfo.

source code

Label

from_string(label)
Parse the a string nucleus label and create a new Label.

source code

Atom

get_atom(chain, label)
Get the Atom in a Chain, designated by a given string label.

source code

bool

match(shift, atom)
Return True if the labels of a ChemShiftInfo and an Atom match.

source code

3-tuple

parse(label)
Parse the components of a string nucleus label.

source code

Properties
	atom_name Nucleus name
	rank Residue rank (1-based)
	residue Residue type (a ProteinAlphabet member)
Inherited from `object`: `__class__`

Method Details

init(self, residue, rank, atom_name)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

residue (EnumItem) - residue type
rank (int) - residue position (1-based)
atom_name (str) - nucleus name

Overrides: object.__init__

(inherited documentation)

str(self)
(Informal representation operator)

source code

str(x)

Overrides: object.__str__: (inherited documentation)

parse(label)
Static Method

source code

Parse the components of a string nucleus label.

Returns: 3-tuple: (residue, rank, atom)

Property Details

atom_name

Nucleus name

Get Method:: unreachable.atom_name(self) - Nucleus name

rank

Residue rank (1-based)

Get Method:: unreachable.rank(self) - Residue rank (1-based)

residue

Residue type (a ProteinAlphabet member)

Get Method:: unreachable.residue(self) - Residue type (a ProteinAlphabet member)

Class Label

__init__(self, residue, rank, atom_name) (Constructor)

__str__(self) (Informal representation operator)

parse(label) Static Method

atom_name

rank

residue

init(self, residue, rank, atom_name)
(Constructor)

str(self)
(Informal representation operator)

parse(label)
Static Method