Package csb :: Package bio :: Package io :: Module fasta :: Class SequenceParser

Class SequenceParser

        object --+    
                 |    
BaseSequenceParser --+
                     |
                    SequenceParser

Known Subclasses:

PDBSequenceParser

Standard FASTA parser. See BaseSequenceParser for details.

Nested Classes
Inherited from `BaseSequenceParser`: `__metaclass__`

Instance Methods

AbstractSequence

read_sequence(self, string)
Parse a single FASTA string

source code

Inherited from BaseSequenceParser: __init__, parse_file, parse_string, read

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables
	__abstractmethods__ = `frozenset([])`

Properties

Inherited from BaseSequenceParser: product_factory, product_type

Inherited from object: __class__

Method Details

read_sequence(self, string)

source code

Parse a single FASTA string

Returns: AbstractSequence

a new sequence, created with BaseSequenceParser.product_factory

Raises:

SequenceFormatError - on parse error

Overrides: BaseSequenceParser.read_sequence

(inherited documentation)