Package csb :: Package apps :: Module csfrag :: Class SecondaryShiftReader

Class SecondaryShiftReader

object --+
         |
        SecondaryShiftReader

Reads secondary shifts from files in CSfrag format.

Instance Methods

dict

load_database(self, path, file='pdbs25cs.scs')
Read the entire PDBS25CS database. source code

dict

read_shifts(self, string)
Read secondary shifts.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables
	DB = `'pdbs25cs.scs'`

Properties
Inherited from `object`: `__class__`

Method Details

load_database(self, path, file=`'pdbs25cs.scs'`)

source code

Read the entire PDBS25CS database.

Returns: dict: dictionary of the form: [entry ID: [rank: [nucleus: sec shift]]]

read_shifts(self, string)

source code

Read secondary shifts.

Parameters:

string (str) - complete secondary shift block

Returns: dict

dictionary of the form: [rank: [nucleus: sec shift]]

Class SecondaryShiftReader

load_database(self, path, file='pdbs25cs.scs')

read_shifts(self, string)

load_database(self, path, file=`'pdbs25cs.scs'`)