Package csb :: Package apps :: Module hhsearch :: Class HHsearch

Class HHsearch

object --+
         |
        HHsearch

Nested Classes
	Options

Instance Methods

__init__(self, binary, db, cpu=None)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

run(self, context)

source code

runmany(self, contexts, workers=32, cpu=1)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
	cpu
	db
	mac_threshold
	max_alignments
	max_evalue
	max_hits
	min_probability
	parser
	program
	ss
Inherited from `object`: `__class__`

Method Details

init(self, binary, db, cpu=None)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

Property Details

cpu

Get Method:: unreachable.cpu(self)
Set Method:: unreachable.cpu(self, value)

db

Get Method:: unreachable.db(self)
Set Method:: unreachable.db(self, value)

mac_threshold

Get Method:: unreachable.mac_threshold(self)
Set Method:: unreachable.mac_threshold(self, value)

max_alignments

Get Method:: unreachable.max_alignments(self)
Set Method:: unreachable.max_alignments(self, value)

max_evalue

Get Method:: unreachable.max_evalue(self)
Set Method:: unreachable.max_evalue(self, value)

max_hits

Get Method:: unreachable.max_hits(self)
Set Method:: unreachable.max_hits(self, value)

min_probability

Get Method:: unreachable.min_probability(self)
Set Method:: unreachable.min_probability(self, value)

parser

Get Method:: unreachable.parser(self)
Set Method:: unreachable.parser(self, value)

program

Get Method:: unreachable.program(self)
Set Method:: unreachable.program(self, value)

ss

Get Method:: unreachable.ss(self)
Set Method:: unreachable.ss(self, value)

Class HHsearch

__init__(self, binary, db, cpu=None) (Constructor)

cpu

db

mac_threshold

max_alignments

max_evalue

max_hits

min_probability

parser

program

ss

init(self, binary, db, cpu=None)
(Constructor)