Package csb :: Package bio :: Package io :: Module whatif :: Class WhatCheckParser

Class WhatCheckParser

object --+
         |
        WhatCheckParser

Simple WhatIf/WhatCheck Summary parser

Instance Methods

__init__(self, binary='DO_WHATCHECK.COM')
x.__init__(...) initializes x; see help(type(x)) for signature source code

a dict

parse(self, fn)
Returns: A dict containing some of the WhatCheck results

source code

a dict

parse_summary(self, fn)
Returns: A dict containing some of the WhatCheck results

source code

run(self, pdb_file)
Runs WhatCheck for the given pdbfile and parses the output.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
Inherited from `object`: `__class__`

Method Details

init(self, binary=`'DO_WHATCHECK.COM'`)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

parse(self, fn)

source code

Parameters:

fn (str) - whatif pdbout.txt file to parse

Returns: a dict

A dict containing some of the WhatCheck results

parse_summary(self, fn)

source code

Parameters:

fn (str) - whatif pdbout.txt file to parse

Returns: a dict

A dict containing some of the WhatCheck results

run(self, pdb_file)

source code

Runs WhatCheck for the given pdbfile and parses the output. Will fail if the WhatCheck binary is not in the path.

Parameters:

pdb_file - file to parse

Returns:

dict of parsed values

Class WhatCheckParser

__init__(self, binary='DO_WHATCHECK.COM') (Constructor)

parse(self, fn)

parse_summary(self, fn)

run(self, pdb_file)

init(self, binary=`'DO_WHATCHECK.COM'`)
(Constructor)