Package csb :: Package bio :: Package io :: Module wwpdb :: Class RegularStructureParser

Class RegularStructureParser

             object --+    
                      |    
AbstractStructureParser --+
                          |
                         RegularStructureParser

Known Subclasses:

PDBHeaderParser

This is the de facto PDB parser, which is designed to read SEQRES and ATOM sections separately, and them map them. Intentionally fails to parse malformed PDB files, e.g. a PDB file without a HEADER section.

Nested Classes
Inherited from `AbstractStructureParser`: `__metaclass__`

Instance Methods

Inherited from AbstractStructureParser: __del__, __init__, guess_chain_type, guess_sequence_type, models, parse, parse_biomolecule, parse_models, parse_residue, parse_residue_safe, parse_structure

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods
Inherited from `AbstractStructureParser`: `create_parser`

Class Variables
	__abstractmethods__ = `frozenset([])`

Properties

Inherited from AbstractStructureParser: filename, mapper

Inherited from object: __class__