Package csb :: Package bio :: Package nmr :: Class ChemShiftScoringModel

Class ChemShiftScoringModel

object --+
         |
        ChemShiftScoringModel

Chemical shift similarity scoring model. See ScoringModel.NUCLEI for a list of supported chemical shift types.

Instance Methods

__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

float or array of floats

negative(self, nucleus, deltas)
Return the probability that a given chemical shift difference indicates no structural similarity (true negative match).

source code

float or array of floats

positive(self, nucleus, deltas)
Return the probability that a given chemical shift difference indicates structural similarity (true positive match).

source code

float or array of floats

score(self, nucleus, deltas)
Return the bit score for a given chemical shift difference.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables
	NUCLEI = `('CA', 'CB', 'C', 'N', 'HA')`

Properties
Inherited from `object`: `__class__`

Method Details

init(self)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

negative(self, nucleus, deltas)

source code

Return the probability that a given chemical shift difference indicates no structural similarity (true negative match).

Parameters:

nucleus (str) - chemical shift (a member of ScoringModel.NUCLEI)
deltas (float or list of floats) - chemical shift difference(s): q-s

Returns: float or array of floats

the raw value of the probability density function

positive(self, nucleus, deltas)

source code

Return the probability that a given chemical shift difference indicates structural similarity (true positive match).

Parameters:

nucleus (str) - chemical shift (a member of ScoringModel.NUCLEI)
deltas (float or list of floats) - chemical shift difference(s): q-s

Returns: float or array of floats

the raw value of the probability density function

score(self, nucleus, deltas)

source code

Return the bit score for a given chemical shift difference.

Parameters:

nucleus (str) - chemical shift (a member of ScoringModel.NUCLEI)
deltas (float or list of floats) - chemical shift difference(s): q-s

Returns: float or array of floats

bit score

Class ChemShiftScoringModel

__init__(self) (Constructor)

negative(self, nucleus, deltas)

positive(self, nucleus, deltas)

score(self, nucleus, deltas)

init(self)
(Constructor)