Package csb :: Package bio :: Package io :: Module psipred :: Class PSIPredParser

Class PSIPredParser

object --+
         |
        PSIPredParser

Simple PSI-PRED Secondary Structure Parser.

Instance Methods

SecondaryStructure

parse(self, psipred_file)

source code

list of PSIPredResidueInfo

parse_scores(self, scores_file)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
Inherited from `object`: `__class__`

Method Details

parse(self, psipred_file)

source code

Parameters:

psipred_file (str) - source PSI-PRED *.horiz file to parse

Returns: SecondaryStructure

parse_scores(self, scores_file)

source code

Parameters:

scores_file (str) - source PSI-PRED *.ss2 file to parse

Returns: list of PSIPredResidueInfo