Package csb :: Package bio :: Package io :: Module hhpred :: Class HHMFileBuilder

Class HHMFileBuilder

object --+
         |
        HHMFileBuilder

Builder for HHpred's hhm files.

Instance Methods

__init__(self, output)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

add_hmm(self, hmm)
Append a new HMM to the destination stream.

source code

write(self, data)

source code

writeline(self, data)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
stream	output Destination stream
Inherited from `object`: `__class__`

Method Details

init(self, output)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

output (file) - destination stream

Overrides: object.__init__

(inherited documentation)

add_hmm(self, hmm)

source code

Append a new HMM to the destination stream.

Parameters:

hmm (ProfileHMM) - profile HMM to serialize

Property Details

output

Destination stream

Get Method:: unreachable.output(self) - Destination stream
Type:: stream

Class HHMFileBuilder

__init__(self, output) (Constructor)

add_hmm(self, hmm)

output

init(self, output)
(Constructor)