Package csb :: Package bio :: Package io :: Module clans :: Class ClansFileBuilder

Class ClansFileBuilder

object --+
         |
        ClansFileBuilder

Known Subclasses:

ClansFileWriter

Base abstract files for building a file in CLANS format. Defines a common step-wise interface according to the Builder pattern.

Nested Classes
	__metaclass__ Metaclass for defining Abstract Base Classes (ABCs).

Instance Methods

__init__(self, output)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

add_hsp_block(self, block_data)

source code

add_param_block(self, block_data)

source code

add_pos_block(self, block_data)

source code

add_rotmtx_block(self, block_data)

source code

add_seq_block(self, block_data)

source code

add_seqgroups_block(self, block_data)

source code

write(self, text)
Write a chunk of text

source code

writeline(self, text)
Write a chunk of text and append a new line terminator

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables
	__abstractmethods__ = `frozenset(['add_hsp_block', 'add_param_b...`

Properties
stream	output Destination stream
Inherited from `object`: `__class__`

Method Details

init(self, output)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

output (stream) - output stream (this is where the product is constructed)

Overrides: object.__init__

(inherited documentation)

Class Variable Details

abstractmethods

Value:

frozenset(['add_hsp_block',
           'add_param_block',
           'add_pos_block',
           'add_rotmtx_block',
           'add_seq_block',
           'add_seqgroups_block'])

Property Details

output

Destination stream

Get Method:: unreachable.output(self) - Destination stream
Type:: stream

Class ClansFileBuilder

__init__(self, output) (Constructor)

__abstractmethods__

output

init(self, output)
(Constructor)

abstractmethods