Package csb :: Package bio :: Package hmm :: Class HMMLayersCollection

Class HMMLayersCollection

              object --+            
                       |            
    core.AbstractIndexer --+        
                           |        
core.BaseCollectionContainer --+    
                               |    
        core.CollectionContainer --+
                                   |
                                  HMMLayersCollection

Provides consecutive, 1-based access to all of the layers in the profile. Each profile layer contains a catalog of available states at that index, e.g.:

>>> profile.layers[i]
the catalog at profile layer i
>>> profile.layers[i][States.Deletion]
the deletion state at index i

Instance Methods

__init__(self, layers=None)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

Inherited from core.CollectionContainer: append

Inherited from core.BaseCollectionContainer: __bool__, __contains__, __getitem__, __iter__, __len__, __nonzero__, __repr__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

Inherited from core.BaseCollectionContainer: last_index, length, start_index

Inherited from object: __class__

Method Details

init(self, layers=None)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

layers (list) - initialization list of HMMLayers

Overrides: object.__init__

(inherited documentation)

Class HMMLayersCollection

__init__(self, layers=None) (Constructor)

init(self, layers=None)
(Constructor)