Package csb :: Package bio :: Package hmm :: Class HHpredHitList

Class HHpredHitList

object --+
         |
        HHpredHitList

Represents a collection of HHpredHits.

Instance Methods

__getitem__(self, index)

source code

__init__(self, hits, query_name='', match_columns=-1, no_of_seqs='', neff=-1.0, searched_hmms=-1, date='', command='')
x.__init__(...) initializes x; see help(type(x)) for signature source code

__iter__(self)

source code

__len__(self)

source code

__repr__(self)
repr(x)

source code

__str__(self)
str(x)

source code

sort(self)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Properties
	command
	date
	match_columns
	neff
	no_of_seqs
	query_name
	searched_hmms
Inherited from `object`: `__class__`

Method Details

init(self, hits, query_name=`''`, match_columns=-1, no_of_seqs=`''`, neff=-1.0, searched_hmms=-1, date=`''`, command=`''`)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

repr(self)
(Representation operator)

source code

repr(x)

Overrides: object.__repr__: (inherited documentation)

str(self)
(Informal representation operator)

source code

str(x)

Overrides: object.__str__: (inherited documentation)

Property Details

command

Get Method:: unreachable.command(self)
Set Method:: unreachable.command(self, value)

date

Get Method:: unreachable.date(self)
Set Method:: unreachable.date(self, value)

match_columns

Get Method:: unreachable.match_columns(self)
Set Method:: unreachable.match_columns(self, value)

neff

Get Method:: unreachable.neff(self)
Set Method:: unreachable.neff(self, value)

no_of_seqs

Get Method:: unreachable.no_of_seqs(self)
Set Method:: unreachable.no_of_seqs(self, value)

query_name

Get Method:: unreachable.query_name(self)
Set Method:: unreachable.query_name(self, value)

searched_hmms

Get Method:: unreachable.searched_hmms(self)
Set Method:: unreachable.searched_hmms(self, value)

Class HHpredHitList

__init__(self, hits, query_name='', match_columns=-1, no_of_seqs='', neff=-1.0, searched_hmms=-1, date='', command='') (Constructor)

__repr__(self) (Representation operator)

__str__(self) (Informal representation operator)

command

date

match_columns

neff

no_of_seqs

query_name

searched_hmms

init(self, hits, query_name=`''`, match_columns=-1, no_of_seqs=`''`, neff=-1.0, searched_hmms=-1, date=`''`, command=`''`)
(Constructor)

repr(self)
(Representation operator)

str(self)
(Informal representation operator)