Package csb :: Package bio :: Package fragments :: Class ChemShiftTarget

Class ChemShiftTarget

            object --+            
                     |            
core.AbstractContainer --+        
                         |        
  core.AbstractNIContainer --+    
                             |    
                        Target --+
                                 |
                                ChemShiftTarget

Nested Classes
Inherited from `core.AbstractContainer`: `__metaclass__`

Instance Methods

__init__(self, id, length, residues, overlap=None)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

assign(self, fragment)
Add a new fragment match.

source code

Target

clone(self)
Returns: a deep copy of the target

source code

Inherited from Target: assignall, filter

Inherited from core.AbstractNIContainer: __getitem__

Inherited from core.AbstractContainer: __bool__, __iter__, __len__, __nonzero__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods
Inherited from `Target`: `deserialize`, `from_profile`, `from_sequence`

Class Variables
Inherited from `Target`: `__abstractmethods__`

Properties

Inherited from Target: accession, chain_id, errors, id, length, matches, max_overlap, residues, sequence

Inherited from object: __class__

Method Details

init(self, id, length, residues, overlap=None)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

id - target sequence ID, in PDB accnC format
length - total target sequence length
residues - a list, containing target's residues. See also Target.from_sequence

Overrides: object.__init__

(inherited documentation)

assign(self, fragment)

source code

Add a new fragment match.

Parameters:

fragment - fragment to assign

Overrides: Target.assign

(inherited documentation)

clone(self)

source code

Returns: Target: a deep copy of the target
Overrides: Target.clone: (inherited documentation)

Class ChemShiftTarget

__init__(self, id, length, residues, overlap=None) (Constructor)

assign(self, fragment)

clone(self)

init(self, id, length, residues, overlap=None)
(Constructor)