Package csb :: Package bio :: Package fragments :: Class ChemShiftAssignment

Class ChemShiftAssignment

   object --+        
            |        
FragmentMatch --+    
                |    
       Assignment --+
                    |
                   ChemShiftAssignment

Instance Methods

__init__(self, source, start, end, qstart, qend, window, score, rmsd)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

Inherited from Assignment: anchored_around, backbone_at, mda_to, nrmsd_to, overlap, rmsd_to, sec_structure_at, torsion_at, transform

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods
Inherited from `Assignment`: `from_fragment`

Class Variables
	BIT_SCORE_THRESHOLD = `1.1`

Properties

window

Inherited from Assignment: backbone, end, neff, score, secondary_structure, sequence, source_id, start, torsion

Inherited from FragmentMatch: id, length, probability, qend, qlength, qstart, rmsd, tm_score

Inherited from object: __class__

Method Details

init(self, source, start, end, qstart, qend, window, score, rmsd)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Parameters:

source - source structure (must have torsion angles precomputed)
start - start position in source (rank)
end - end position in source (rank)
id - fragment ID
qstart - start position in target (rank)
qend - end position in target (rank)
probability - probability of assignment
rmsd - RMSD of the fragment, compared to target's native structure

Overrides: object.__init__

(inherited documentation)

Property Details

window

Get Method:: unreachable.window(self)

Class ChemShiftAssignment

__init__(self, source, start, end, qstart, qend, window, score, rmsd) (Constructor)

window

init(self, source, start, end, qstart, qend, window, score, rmsd)
(Constructor)