Package csb :: Package apps :: Module buildhmm :: Class PDBProfileBuilder

Class PDBProfileBuilder

    object --+    
             |    
ProfileBuilder --+
                 |
                PDBProfileBuilder

Nested Classes
Inherited from `ProfileBuilder`: `__metaclass__`

Instance Methods

configure_input(self)

source code

format_structure(self)

source code

make_hmm(self)

source code

Inherited from ProfileBuilder: __init__, build_alignment, calibrate_hmm, run

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods
Inherited from `ProfileBuilder`: `create`

Class Variables
	__abstractmethods__ = `frozenset([])`
Inherited from `ProfileBuilder`: `EMISSION_PSEUDO`, `TRANSITION_PSEUDO`

Properties

Inherited from ProfileBuilder: target_id

Inherited from object: __class__

Method Details

configure_input(self)

source code

Overrides: ProfileBuilder.configure_input

make_hmm(self)

source code

Overrides: ProfileBuilder.make_hmm